LinkDB

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Started at: 2024-11-20 15:29:45 UTC
Finished at: 2024-11-20 15:29:48 UTC

The endpoint does not support content negotiation for text/turtle

Elapsed time0.901 [s]
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http://www.genome.jp/sparql/linkdb
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https://www.genome.jp/sparql/linkdb
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Date: Wed, 20 Nov 2024 15:29:28 GMT
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{ "head": { "link": [], "vars": ["s"] },
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    { "s": { "type": "uri", "value": "https://www.genome.jp/linkdb/T01496/SELMODRAFT_100130" }} ] } }
Elapsed time1.878 [s]
RequestMethod
GET
URL
https://www.genome.jp/linkdb/T01496/SELMODRAFT_100130
Headers
User-Agent: Umaka-Crawler/1.0.0 by DBCLS (umakadata@dbcls.jp)
Accept: text/turtle
Body
ResponseURL
https://www.genome.jp/dbget-bin/www_bget?T01496:SELMODRAFT_100130
Status
200
Headers
Date: Wed, 20 Nov 2024 15:29:46 GMT
Server: Apache
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<!doctype html>
<html><head>
<title>KEGG T01496: SELMODRAFT_100130</title>
<link type="text/css" rel="stylesheet" href="/css/gn2.css?1732116587">
<link type="text/css" rel="stylesheet" href="/css/bget.css?1732116587">
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function Link_XtrctSeq2(form) {
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</head>
<body>
<div>

<table border=0 cellpadding=0 cellspacing=0><tr><td>
<table border=0 cellpadding=0 cellspacing=0 width="650"><tr><td width=70><a href="/kegg/kegg2.html"><img align="middle" alt="KEGG" border=0 src="/Fig/bget/kegg1.gif"></a></td><td>&nbsp;&nbsp;&nbsp;</td><td><a name="smo:SELMODRAFT_100130"></a><font class="title1">Selaginella moellendorffii: SELMODRAFT_100130</font></td><td class="tar vbot"><button class="btn" onclick="javascript:void(window.open(&#39;/kegg/document/help_bget_genes.html&#39;,&#39;KEGG_Help&#39;,&#39;toolbar=no,location=no,directories=no,width=720,height=640,resizable=yes,scrollbars=yes&#39;));return false;">Help</button></td></tr></table><form method="post" action="javascript:Link_XtrctSeq2(document.form1);" enctype="application/x-www-form-urlencoded" id="form1" name="form1"><input type="hidden" name="ACCESSION" value="SELMODRAFT_100130" >
<input type="hidden" name="KEGGID" value="smo:SELMODRAFT_100130" >
<input type="hidden" name="ORG" value="smo" >
<input type="hidden" name="FROM" value="" >
<input type="hidden" name="TO" value="" >
<input type="hidden" name="VECTOR" value="1" >
<input type="hidden" name="CHR" value="" >
<input type="hidden" name="source" value="OPEN" >
<input type="hidden" name="pos" value="Unknown" >
</form><table class="w1" width="650">
<tr>
<td class="fr1 w1">
<table width="650" class="w2">

<tr><th class="th10 deft tal vmid"><span class="nowrap">Entry</span></th>
<td class="td10 defd"><table class="w1" width="100%"><tr><td class="tal pd0"><code><span class="nowrap">SELMODRAFT_100130&nbsp;CDS&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<a href="/kegg-bin/show_organism?org=T01496">T01496</a>&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;&nbsp;<br>
</span></code></td></tr></table></td></tr>


<tr><th class="th11 deft tal vtop"><span class="nowrap">Name</span></th>
<td class="td11 defd"><div class="cel"><div class="cel">(RefSeq) hypothetical protein<br>
</div></div></td></tr>


<tr><th class="th10 rept tal vtop"><span class="nowrap">&nbsp;&nbsp;KO</span></th>
<td class="td10 repd"><div class="cel"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap"><a href="/entry/K15341">K15341</a>&nbsp;&nbsp;</span></td><td>DNA cross-link repair 1B protein [EC:3.1.-.-]</td></tr></table></div></td></tr>


<tr><th class="th11 deft tal vtop"><span class="nowrap">Organism</span></th>
<td class="td11 defd"><div class="cel"><a href="/kegg-bin/show_organism?org=smo">smo</a>&nbsp;&nbsp;Selaginella moellendorffii<br>
</div></td></tr>


<tr><th class="th10 deft tal vtop"><span class="nowrap">Brite</span></th>
<td class="td10 defd"><div class="cel"><span class="nowrap">KEGG Orthology (KO) [BR:<a href="/brite/smo00001+SELMODRAFT_100130">smo00001</a>]<br>
&nbsp;09180 Brite Hierarchies<br>
&nbsp;&nbsp;09182 Protein families: genetic information processing<br>
&nbsp;&nbsp;&nbsp;03400 DNA repair and recombination proteins [BR:<a href="/brite/smo03400+SELMODRAFT_100130">smo03400</a>]<br>
&nbsp;&nbsp;&nbsp;&nbsp;SELMODRAFT_100130<br>
DNA repair and recombination proteins [BR:<a href="/brite/smo03400+SELMODRAFT_100130">smo03400</a>]<br>
&nbsp;Eukaryotic type<br>
&nbsp;&nbsp;Other factors with a suspected DNA repair function<br>
&nbsp;&nbsp;&nbsp;Nucleases<br>
&nbsp;&nbsp;&nbsp;&nbsp;SELMODRAFT_100130<br>
</span></div><button class="btn" onclick="location.href='https://www.kegg.jp/kegg-bin/search_brite?option=-a&amp;search_string=SELMODRAFT_100130&amp;prefix=smo';return false;">BRITE hierarchy</button></td></tr>


<tr><th class="th11 deft tal vmid"><span class="nowrap">SSDB</span></th>
<td class="td11 defd"><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_best?org_gene=smo:SELMODRAFT_100130';return false;">Ortholog</button><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_paralog?org_gene=smo:SELMODRAFT_100130';return false;">Paralog</button><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/www_ssget?smo:SELMODRAFT_100130';return false;">GFIT</button></td></tr>


<tr><th class="th10 deft tal vtop"><span class="nowrap">Motif</span></th>
<td class="td10 defd"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">Pfam:&nbsp;</span></td><td><a href="/entry/pf:DRMBL">DRMBL</a> <a href="/entry/pf:Lactamase_B_2">Lactamase_B_2</a></td></tr></table><button class="btn" onclick="location.href='https://www.kegg.jp/ssdb-bin/ssdb_motif?kid=smo:SELMODRAFT_100130';return false;">Motif</button></td></tr>


<tr><th class="th11 deft tal vtop"><span class="nowrap">Other DBs</span></th>
<td class="td11 defd"><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">NCBI-GeneID:&nbsp;</span></td><td><a href="https://www.ncbi.nlm.nih.gov/gene/9656349">9656349</a></td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">NCBI-ProteinID:&nbsp;</span></td><td><a href="https://www.ncbi.nlm.nih.gov/protein/XP_002974190">XP_002974190</a></td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">JGI:&nbsp;</span></td><td><a href="https://genome.jgi.doe.gov/cgi-bin/dispGeneModel?db=Selmo1&id=100130">100130</a></td></tr></table><table class="w1"><tr><td class="vtop pd0"><span class="nowrap">UniProt:&nbsp;</span></td><td><a href="https://www.uniprot.org/uniprot/D8RSX0">D8RSX0</a></td></tr></table></td></tr>


<tr><th class="th10 deft tal vtop"><span class="nowrap">Position</span></th>
<td class="td10 defd"><div class="cel">Unknown<br>
</div></td></tr>


<tr><th class="th11 deft tal vtop"><span class="nowrap">AA seq</span></th>
<td class="td11 defd">415 aa <button class="btn" onclick="location.href='/entry/-f+-n+a+smo:SELMODRAFT_100130';return false;">AA seq</button><button class="btn" onclick="location.href='/tools-bin/search_sequence?prog=blast&amp;seqid=smo:SELMODRAFT_100130+aa';return false;">DB search</button><br>
MRRRFVVDEWRSPSDAYFLTHLHADHTEGLSADWCRGPLYCSQVTAMLLLARFKGFNPAL<br>
LHILDLGTPTLVSSNNAADSLLEVTAIDADHCPGAVMYVFHGEFGCVLHTGDFRWNNDRC<br>
TLEERKEALREAIGGAQVDFLYLDNTFCNPLFCFPSRNAAATRVIELIRGHPEKDIVIGI<br>
DNLGKEELLLSIAQALETKICVWPQRLKTMHLLQLPDVFTTDTSITRIRAVPRCSVSTRS<br>
LKLLNEIRPTLGILPTGCLCLCNPSSGRKPKPKLLCSESCYKSRERTSDNQAADASSRLI<br>
NVVPYSLHCCFSEARDFVDLIRPKSVLGIVKSSTDYSINPIQLLSGCQATTSTTAASLRE<br>
GPRVLLDTRPDLDCSHKLRDLLQVRCSSTKLRRRKNLSRRRQRLHGRGAKLYEEG</td></tr>


<tr><th class="th10 deft tal vt…
[Trailing bodies are truncated]
Elapsed time4.802 [s]
RequestMethod
POST
URL
http://www.genome.jp/sparql/linkdb
Headers
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query=SELECT+%3Fs+WHERE+%7B+GRAPH+%3Fg+%7B+%3Fs+%3Fp+%3Fo+.+FILTER%28STRSTARTS%28STR%28%3Fs%29%2C+%22https%3A%2F%2Fwww.genome.jp%2Flinkdb%2Fgenbank%2F%22%29%29+%7D+%7D+LIMIT+1
ResponseURL
https://www.genome.jp/sparql/linkdb
Status
200
Headers
Date: Wed, 20 Nov 2024 15:29:35 GMT
Server: Virtuoso/07.20.3217 (Linux) x86_64-unknown-linux-gnu
Accept-Ranges: bytes
Content-Type: application/sparql-results+json
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{ "head": { "link": [], "vars": ["s"] },
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Elapsed time0.5 [s]
RequestMethod
GET
URL
https://www.genome.jp/linkdb/genbank/GABL01000056
Headers
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Accept: text/turtle
Body
ResponseURL
https://www.genome.jp/linkdb/genbank/GABL01000056
Status
200
Headers
Date: Wed, 20 Nov 2024 15:29:48 GMT
Server: Mojolicious (Perl)
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No link to genbank:GABL01000056